HMMER: HMMER (Biosequence analysis using profile hidden Markov models) HMMER: HMMER: HMMER is used for searching sequence databases for sequence HMMER: homologs, and for making sequence alignments. It implements HMMER: methods using probabilistic models called profile hidden Markov HMMER: models (profile HMMs). HMMER: HMMER: Home: http://hmmer.org/ HMMER: Publications: http://hmmer.org/publications.html HMMER: HMMER: